SubtiBank SubtiBank
yfmM [2019-09-02 12:54:02]
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yfmM [2019-09-02 12:54:02]

similar to [SW|ABC transporter] (ATP-binding protein)
locus
BSU_07420
pI
5.11
mw
59.02 kDa
protein length
518 aa Sequence Blast
gene length
1557 bp Sequence Blast
function
unknown
product
[SW|ABC transporter] (ATP-binding protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]

    • Gene

    Coordinates
    814,384 815,940

    The protein

    Protein family

  • [SW|ABC transporter superfamily] (according to UniProt)
  • [SW|ABCF ATPase subfamily] [pubmed|30597160]

    • Paralogous protein(s)

  • [protein|F69F15198ACF8A8347C450EEC09F000EECEDEC41|YfmR], [protein|1F56D3275386BB54A774BFA045C09E36D1268471|YdiF], [protein|2F79DB15D359A127C2D833CC0465E18E1725F539|YkpA]

    • Structure

  • [PDB|3J5S] (EttA from E. coli, 31% identity) [pubmed|24389465]
  • [PDB|4FIN] (EttA from E. coli, 31% identity) [pubmed|24389466]

    • Expression and Regulation

    Operons

    genes
    [gene|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C238 (yfmM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2236 NBRP B. subtilis, Japan]
  • BKE07420 ([gene|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07420 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTACACCTCTATCGT, downstream forward: _UP4_TAATTTATAAAAAAACCCGC
  • BKK07420 ([gene|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07420 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTACACCTCTATCGT, downstream forward: _UP4_TAATTTATAAAAAAACCCGC

    • References

    Reviews

  • 24500425,30746819

    • Original publications

  • 10092453,24389466,24389465,27006457